<?xml version="1.0" encoding="UTF-8"?>
<?xml-stylesheet type="text/xsl" href="../xsl/database/show_single_result.1.0.1.xsl" ?>
<glycomedb_document path_to_root="..">
	<header>
		<title>Database search options</title>
		<description></description>
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			<file>../css/glycomedb.css</file>
		</stylesheet>
		<keywords>carbohydrate,carbohydrate structures</keywords>
		<author>Rene Ranzinger</author>
	</header>
	<menu>
		<entry 
			open="false"
			select="false"
			text="Home" url="../About.action" >
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			text="Database" url="../showMenu.action?major=database" >
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				text="Search by database ID" url="../database/searchByDatabase.action" >
			</entry>
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				open="false"
				select="false"
				text="Exact structure search" url="../database/searchStructure.action" >
			</entry>
			<entry 
				open="false"
				select="false"
				text="Substructure search" url="../database/searchSubStructure.action" >
			</entry>
			<entry 
				open="false"
				select="false"
				text="Similarity search" url="../database/searchSimilarStructure.action" >
			</entry>
			<entry 
				open="false"
				select="false"
				text="MCS search" url="../database/searchMCS.action" >
			</entry>
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				open="false"
				select="false"
				text="Search by species" url="../database/searchBySpecies.action" >
			</entry>
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	</menu>


<body title="Structure information for structure 534">
	<structure_information id="534" flags="101101" back_text="New search" back_url="" 
		image_width="186" image_height="134" image_type="cfg">
 		<species count="5" remote="no">
			<taxon ncbi="9913" name="Bos taurus">
				<entry database="carbbank" id="607"/>
				<entry database="eurocarbdb(ebi)" id="598"/>
				<entry database="glycosciences.de" id="676"/>
			</taxon>
			<taxon ncbi="9615" name="Canis lupus familiaris">
				<entry database="cfg" id="carbOlink_20570_D000"/>
				<entry database="eurocarbdb(ebi)" id="598"/>
			</taxon>
			<taxon ncbi="10029" name="Cricetulus griseus">
				<entry database="carbbank" id="24978"/>
				<entry database="carbbank" id="42351"/>
				<entry database="cfg" id="carbOlink_20569_D000"/>
				<entry database="cfg" id="carbOlink_20570_D000"/>
				<entry database="cfg" id="carbOlink_20571_D000"/>
				<entry database="eurocarbdb(ebi)" id="598"/>
				<entry database="glycosciences.de" id="676"/>
				<entry database="glycosciences.de" id="5335"/>
			</taxon>
			<taxon ncbi="11795" name="Friend murine leukemia virus">
				<entry database="carbbank" id="3749"/>
				<entry database="eurocarbdb(ebi)" id="598"/>
				<entry database="glycosciences.de" id="5335"/>
			</taxon>
			<taxon ncbi="9606" name="Homo sapiens">
				<entry database="carbbank" id="600"/>
				<entry database="carbbank" id="601"/>
				<entry database="carbbank" id="604"/>
				<entry database="carbbank" id="605"/>
				<entry database="carbbank" id="606"/>
				<entry database="carbbank" id="608"/>
				<entry database="carbbank" id="4200"/>
				<entry database="carbbank" id="4457"/>
				<entry database="carbbank" id="7942"/>
				<entry database="carbbank" id="7951"/>
				<entry database="carbbank" id="8011"/>
				<entry database="carbbank" id="8012"/>
				<entry database="carbbank" id="8013"/>
				<entry database="carbbank" id="8014"/>
				<entry database="carbbank" id="8016"/>
				<entry database="carbbank" id="8017"/>
				<entry database="carbbank" id="8018"/>
				<entry database="carbbank" id="8019"/>
				<entry database="carbbank" id="18996"/>
				<entry database="carbbank" id="21557"/>
				<entry database="carbbank" id="22747"/>
				<entry database="carbbank" id="22750"/>
				<entry database="carbbank" id="32227"/>
				<entry database="carbbank" id="35081"/>
				<entry database="carbbank" id="35990"/>
				<entry database="cfg" id="carbOlink_20569_D000"/>
				<entry database="cfg" id="carbOlink_20570_D000"/>
				<entry database="cfg" id="carbOlink_20571_D000"/>
				<entry database="eurocarbdb(ebi)" id="598"/>
				<entry database="glycosciences.de" id="676"/>
				<entry database="glycosciences.de" id="5335"/>
				<entry database="glycosciences.de" id="5336"/>
				<entry database="glycosciences.de" id="16225"/>
				<entry database="glycosciences.de" id="19945"/>
				<entry database="glycosciences.de" id="19946"/>
			</taxon>
		</species>
 		<aglycon count="11" remote="no">
			<aglyca name="Ser" reducing="yes">
				<entry database="carbbank" id="601"/>
				<entry database="carbbank" id="602"/>
				<entry database="carbbank" id="604"/>
				<entry database="carbbank" id="605"/>
				<entry database="carbbank" id="606"/>
				<entry database="carbbank" id="607"/>
				<entry database="carbbank" id="608"/>
				<entry database="carbbank" id="4200"/>
				<entry database="carbbank" id="4457"/>
				<entry database="carbbank" id="5161"/>
				<entry database="carbbank" id="5215"/>
				<entry database="carbbank" id="7941"/>
				<entry database="carbbank" id="7942"/>
				<entry database="carbbank" id="7951"/>
				<entry database="carbbank" id="8011"/>
				<entry database="carbbank" id="8012"/>
				<entry database="carbbank" id="8013"/>
				<entry database="carbbank" id="8014"/>
				<entry database="carbbank" id="8015"/>
				<entry database="carbbank" id="8016"/>
				<entry database="carbbank" id="13281"/>
				<entry database="carbbank" id="13571"/>
				<entry database="carbbank" id="21898"/>
				<entry database="carbbank" id="22442"/>
				<entry database="carbbank" id="22750"/>
				<entry database="carbbank" id="29113"/>
				<entry database="carbbank" id="32227"/>
				<entry database="carbbank" id="32428"/>
				<entry database="carbbank" id="35081"/>
				<entry database="carbbank" id="35742"/>
				<entry database="carbbank" id="35990"/>
				<entry database="carbbank" id="42351"/>
				<entry database="carbbank" id="44021"/>
				<entry database="carbbank" id="46409"/>
				<entry database="glycosciences.de" id="676"/>
				<entry database="glycosciences.de" id="16225"/>
				<entry database="glycosciences.de" id="17672"/>
				<entry database="glycosciences.de" id="19945"/>
			</aglyca>
			<aglyca name="Benzyl" reducing="yes">
				<entry database="carbbank" id="45096"/>
				<entry database="glycosciences.de" id="4530"/>
			</aglyca>
			<aglyca name="Thr" reducing="yes">
				<entry database="carbbank" id="600"/>
				<entry database="carbbank" id="3749"/>
				<entry database="carbbank" id="8017"/>
				<entry database="carbbank" id="8018"/>
				<entry database="carbbank" id="8019"/>
				<entry database="carbbank" id="18996"/>
				<entry database="carbbank" id="21557"/>
				<entry database="carbbank" id="21898"/>
				<entry database="carbbank" id="22747"/>
				<entry database="carbbank" id="23361"/>
				<entry database="carbbank" id="24978"/>
				<entry database="carbbank" id="30507"/>
				<entry database="carbbank" id="32227"/>
				<entry database="carbbank" id="32429"/>
				<entry database="glycosciences.de" id="5335"/>
				<entry database="glycosciences.de" id="5336"/>
				<entry database="glycosciences.de" id="17672"/>
				<entry database="glycosciences.de" id="19946"/>
			</aglyca>
			<aglyca name="Phenyl" reducing="yes">
				<entry database="carbbank" id="3657"/>
				<entry database="glycosciences.de" id="17631"/>
			</aglyca>
			<aglyca name="[2-bromoethyl]" reducing="yes">
				<entry database="carbbank" id="22770"/>
				<entry database="glycosciences.de" id="19990"/>
			</aglyca>
			<aglyca name="Ser/Thr" reducing="yes">
				<entry database="kegg" id="G00027"/>
			</aglyca>
			<aglyca name=";S" reducing="yes">
				<entry database="cfg" id="carbOlink_20569_D000"/>
			</aglyca>
			<aglyca name=";S/T" reducing="yes">
				<entry database="cfg" id="carbOlink_20570_D000"/>
			</aglyca>
			<aglyca name=";T" reducing="yes">
				<entry database="cfg" id="carbOlink_20571_D000"/>
			</aglyca>
			<aglyca name="#Sp2.BT" reducing="yes">
				<entry database="cfg" id="carbSynthe_0140_D000"/>
			</aglyca>
			<aglyca name="#Sp8" reducing="yes">
				<entry database="cfg" id="carbSynthe_0727_D000"/>
			</aglyca>
		</aglycon>
		<remote count="68">
			<entry database="carbbank" id="600"/>
			<entry database="carbbank" id="601"/>
			<entry database="carbbank" id="602"/>
			<entry database="carbbank" id="604"/>
			<entry database="carbbank" id="605"/>
			<entry database="carbbank" id="606"/>
			<entry database="carbbank" id="607"/>
			<entry database="carbbank" id="608"/>
			<entry database="carbbank" id="3657"/>
			<entry database="carbbank" id="3749"/>
			<entry database="carbbank" id="4200"/>
			<entry database="carbbank" id="4457"/>
			<entry database="carbbank" id="5161"/>
			<entry database="carbbank" id="5215"/>
			<entry database="carbbank" id="7941"/>
			<entry database="carbbank" id="7942"/>
			<entry database="carbbank" id="7951"/>
			<entry database="carbbank" id="8011"/>
			<entry database="carbbank" id="8012"/>
			<entry database="carbbank" id="8013"/>
			<entry database="carbbank" id="8014"/>
			<entry database="carbbank" id="8015"/>
			<entry database="carbbank" id="8016"/>
			<entry database="carbbank" id="8017"/>
			<entry database="carbbank" id="8018"/>
			<entry database="carbbank" id="8019"/>
			<entry database="carbbank" id="13281"/>
			<entry database="carbbank" id="13571"/>
			<entry database="carbbank" id="18996"/>
			<entry database="carbbank" id="21557"/>
			<entry database="carbbank" id="21898"/>
			<entry database="carbbank" id="22442"/>
			<entry database="carbbank" id="22747"/>
			<entry database="carbbank" id="22750"/>
			<entry database="carbbank" id="22770"/>
			<entry database="carbbank" id="23361"/>
			<entry database="carbbank" id="24978"/>
			<entry database="carbbank" id="29113"/>
			<entry database="carbbank" id="30507"/>
			<entry database="carbbank" id="32227"/>
			<entry database="carbbank" id="32428"/>
			<entry database="carbbank" id="32429"/>
			<entry database="carbbank" id="35081"/>
			<entry database="carbbank" id="35742"/>
			<entry database="carbbank" id="35990"/>
			<entry database="carbbank" id="42351"/>
			<entry database="carbbank" id="44021"/>
			<entry database="carbbank" id="45096"/>
			<entry database="carbbank" id="46409"/>
			<entry database="cfg" id="carbOlink_20569_D000"/>
			<entry database="cfg" id="carbOlink_20570_D000"/>
			<entry database="cfg" id="carbOlink_20571_D000"/>
			<entry database="cfg" id="carbSynthe_0140_D000"/>
			<entry database="cfg" id="carbSynthe_0727_D000"/>
			<entry database="eurocarbdb(ebi)" id="598"/>
			<entry database="glycosciences.de" id="676"/>
			<entry database="glycosciences.de" id="4530"/>
			<entry database="glycosciences.de" id="5335"/>
			<entry database="glycosciences.de" id="5336"/>
			<entry database="glycosciences.de" id="16225"/>
			<entry database="glycosciences.de" id="17631"/>
			<entry database="glycosciences.de" id="17672"/>
			<entry database="glycosciences.de" id="19945"/>
			<entry database="glycosciences.de" id="19946"/>
			<entry database="glycosciences.de" id="19990"/>
			<entry database="glycosciences.de" id="23056"/>
			<entry database="kegg" id="G00027"/>
			<entry database="pdb" id="2cwg"/>
		</remote>
		<expire count="3">
			<entry database="eurocarbdb(nibrt)" id="598" date="2009-11-09"/>
			<entry database="glyaffinity" id="166" date="2009-07-17"/>
			<entry database="glyaffinity" id="914" date="2009-09-16"/>
		</expire>
		<deleted count="0">
		</deleted>
		<motifs count="1">
			<motif id="100" name="O-Glycan core 1" class="O-Glycan"/>
		</motifs>
		<condenced>RES
1b:a-dgal-HEX-1:5
2s:n-acetyl
3b:b-dgal-HEX-1:5
4b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d
5s:n-acetyl
6b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d
7s:n-acetyl
LIN
1:1d(2+1)2n
2:1o(3+1)3d
3:3o(3+2)4d
4:4d(5+1)5n
5:1o(6+2)6d
6:6d(5+1)7n
</condenced>
		<glycoct><![CDATA[<?xml version="1.0" encoding="UTF-8"?>
<sugar version="1.0">
  <residues>
    <basetype id="1" anomer="a" superclass="hex" ringStart="1" ringEnd="5" name="a-dgal-HEX-1:5">
      <stemtype id="1" type="dgal" />
    </basetype>
    <substituent id="2" name="n-acetyl" />
    <basetype id="3" anomer="b" superclass="hex" ringStart="1" ringEnd="5" name="b-dgal-HEX-1:5">
      <stemtype id="1" type="dgal" />
    </basetype>
    <basetype id="4" anomer="a" superclass="non" ringStart="2" ringEnd="6" name="a-dgro-dgal-NON-2:6|1:a|2:keto|3:d">
      <stemtype id="1" type="dgro" />
      <stemtype id="2" type="dgal" />
      <modification type="a" pos_one="1" />
      <modification type="keto" pos_one="2" />
      <modification type="d" pos_one="3" />
    </basetype>
    <substituent id="5" name="n-acetyl" />
    <basetype id="6" anomer="a" superclass="non" ringStart="2" ringEnd="6" name="a-dgro-dgal-NON-2:6|1:a|2:keto|3:d">
      <stemtype id="1" type="dgro" />
      <stemtype id="2" type="dgal" />
      <modification type="a" pos_one="1" />
      <modification type="keto" pos_one="2" />
      <modification type="d" pos_one="3" />
    </basetype>
    <substituent id="7" name="n-acetyl" />
  </residues>
  <linkages>
    <connection id="1" parent="1" child="2">
      <linkage id="1" parentType="d" childType="n">
        <parent pos="2" />
        <child pos="1" />
      </linkage>
    </connection>
    <connection id="2" parent="1" child="3">
      <linkage id="2" parentType="o" childType="d">
        <parent pos="3" />
        <child pos="1" />
      </linkage>
    </connection>
    <connection id="3" parent="3" child="4">
      <linkage id="3" parentType="o" childType="d">
        <parent pos="3" />
        <child pos="2" />
      </linkage>
    </connection>
    <connection id="4" parent="4" child="5">
      <linkage id="4" parentType="d" childType="n">
        <parent pos="5" />
        <child pos="1" />
      </linkage>
    </connection>
    <connection id="5" parent="1" child="6">
      <linkage id="5" parentType="o" childType="d">
        <parent pos="6" />
        <child pos="2" />
      </linkage>
    </connection>
    <connection id="6" parent="6" child="7">
      <linkage id="6" parentType="d" childType="n">
        <parent pos="5" />
        <child pos="1" />
      </linkage>
    </connection>
  </linkages>
</sugar>

]]></glycoct>
		<glyde><![CDATA[<?xml version="1.0" encoding="UTF-8"?>
<GlydeII>
  <molecule subtype="glycan" id="From_GlycoCT_Translation">
    <residue subtype="base_type" partid="1" ref="http://www.monosaccharideDB.org/GLYDE-II.jsp?G=a-dgal-HEX-1:5" />
    <residue subtype="substituent" partid="2" ref="http://www.monosaccharideDB.org/GLYDE-II.jsp?G=n-acetyl" />
    <residue subtype="base_type" partid="3" ref="http://www.monosaccharideDB.org/GLYDE-II.jsp?G=b-dgal-HEX-1:5" />
    <residue subtype="base_type" partid="4" ref="http://www.monosaccharideDB.org/GLYDE-II.jsp?G=a-dgro-dgal-NON-2:6|1:a|2:keto|3:d" />
    <residue subtype="substituent" partid="5" ref="http://www.monosaccharideDB.org/GLYDE-II.jsp?G=n-acetyl" />
    <residue subtype="base_type" partid="6" ref="http://www.monosaccharideDB.org/GLYDE-II.jsp?G=a-dgro-dgal-NON-2:6|1:a|2:keto|3:d" />
    <residue subtype="substituent" partid="7" ref="http://www.monosaccharideDB.org/GLYDE-II.jsp?G=n-acetyl" />
    <residue_link from="2" to="1">
      <atom_link from="N1H" to="C2" to_replace="O2" bond_order="1" />
    </residue_link>
    <residue_link from="3" to="1">
      <atom_link from="C1" to="O3" from_replace="O1" bond_order="1" />
    </residue_link>
    <residue_link from="4" to="3">
      <atom_link from="C2" to="O3" from_replace="O2" bond_order="1" />
    </residue_link>
    <residue_link from="5" to="4">
      <atom_link from="N1H" to="C5" to_replace="O5" bond_order="1" />
    </residue_link>
    <residue_link from="6" to="1">
      <atom_link from="C2" to="O6" from_replace="O2" bond_order="1" />
    </residue_link>
    <residue_link from="7" to="6">
      <atom_link from="N1H" to="C5" to_replace="O5" bond_order="1" />
    </residue_link>
  </molecule>
</GlydeII>

]]></glyde>
		<encodings>
			<encoding name="GlycoCT{condensed}"/>
			<encoding name="GlycoCT{XML}"/>
			<encoding name="GlydeII"/>
		</encodings>
	</structure_information>
</body>
	<footer/>
</glycomedb_document>


